Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs375299532 chr15:30900637 T/G 0 176 25.92 20.37 3.17 KM Plot
PCPG rs375321281 chr15:30989564 T/C 1.11E-16 175 25.67 24.82 2.12 KM Plot
PCPG rs3761496 chr22:50246466 T/C 0.000154 178 25.53 20.2 15.18 KM Plot
PCPG rs3762179 chr16:87325912 C/T 1.11E-16 170 23.43 30.33 2.22 KM Plot
PCPG rs3764258 chr16:89801014 C/G 0.000194 174 25.87 20.28 36.37 KM Plot
PCPG rs3764309 chr16:71787918 G/C 1.23E-5 172 21.95 30.93 14.5 KM Plot
PCPG rs3764473 chr18:74536101 C/T 6.08E-9 176 25.6 24.83 10.17 KM Plot
PCPG rs3769013 chr2:136556182 C/T 0.000207 178 25.92 24.1 10.3 KM Plot
PCPG rs3769667 chr2:24284116 G/C 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs3770495 chr2:217049741 G/A 7.45E-5 175 25 29.43 2.93 KM Plot
PCPG rs3770497 chr2:217047640 A/G 6.88E-5 176 24.7 31.68 2.93 KM Plot
PCPG rs377160385 chr16:89847917 TAA/T 0.000249 173 25.87 20.2 36.37 KM Plot
PCPG rs3772387 chr3:136647481 G/A 0.000296 176 20.2 27.27 23.03 KM Plot
PCPG rs3784041 chr14:74435483 A/G 3.19E-6 178 25.4 28.38 10.3 KM Plot
PCPG rs3784042 chr14:74435370 C/T 3.57E-6 177 25.4 28.47 10.3 KM Plot